Index

A

any_re_search() (in module reproman.utils) assure_bytes() (in module reproman.utils) assure_dict_from_str() (in module reproman.utils) assure_dir() (in module reproman.utils) assure_list() (in module reproman.utils)

assure_list_from_str() (in module reproman.utils) assure_tuple_or_list() (in module reproman.utils) assure_unicode() (in module reproman.utils) attrib() (in module reproman.utils) auto_repr() (in module reproman.utils)

B

BLACK (reproman.log.ColorFormatter attribute)

BLUE (reproman.log.ColorFormatter attribute) BOLD_SEQ (reproman.log.ColorFormatter attribute)

C

cached_property() (in module reproman.utils) call() (reproman.cmd.Runner method) chpwd (class in reproman.utils) cloud instance cmd_err_filter() (in module reproman.utils) COLOR_SEQ (reproman.log.ColorFormatter attribute) ColorFormatter (class in reproman.log) COLORS (reproman.log.ColorFormatter attribute)

command_as_string() (in module reproman.utils) commands (reproman.cmd.GitRunner attribute) (reproman.cmd.Runner attribute) ConfigManager (class in reproman.config) container cwd (reproman.cmd.GitRunner attribute) (reproman.cmd.Runner attribute) CYAN (reproman.log.ColorFormatter attribute)

D

dirs (reproman.config.ConfigManager attribute)

dry (reproman.cmd.GitRunner attribute) (reproman.cmd.Runner attribute)

E

encode_filename() (in module reproman.utils) env (reproman.cmd.GitRunner attribute) (reproman.cmd.Runner attribute)

environment escape_filename() (in module reproman.utils) execute_command_batch() (in module reproman.utils) expandpath() (in module reproman.utils)

F

file_basename() (in module reproman.utils) find_files() (in module reproman.utils)

format() (reproman.log.ColorFormatter method) formatter_msg() (reproman.log.ColorFormatter method)

G

generate_unique_name() (in module reproman.utils) get() (reproman.config.ConfigManager method) get_as_dtype() (reproman.config.ConfigManager method) get_cmd_batch_len() (in module reproman.utils) get_func_kwargs_doc() (in module reproman.utils) get_git_environ_adjusted() (reproman.cmd.GitRunner static method) get_repo_instance() (in module reproman.cmdline.helpers) get_runner() (in module reproman.cmd)

get_tempfile_kwargs() (in module reproman.utils) getargspec() (in module reproman.utils) getboolean() (reproman.config.ConfigManager method) getIncludes() (reproman.support.configparserinc.SafeConfigParserWithIncludes static method) getpath() (reproman.config.ConfigManager method) getpwd() (in module reproman.utils) GitRunner (class in reproman.cmd) GREEN (reproman.log.ColorFormatter attribute)

H

HashableDict (class in reproman.utils)

HelpAction (class in reproman.cmdline.helpers)

I

instantiate_attr_object() (in module reproman.utils) is_binarystring() (in module reproman.utils) is_explicit_path() (in module reproman.utils)

is_interactive() (in module reproman.utils) is_subpath() (in module reproman.utils) is_unicode() (in module reproman.utils) items_to_dict() (in module reproman.utils)

J

join_sequence_of_dicts() (in module reproman.utils)

K

knows_annex() (in module reproman.utils)

L

line_profile() (in module reproman.utils) link_file_load() (in module reproman.cmd)

lmtime() (in module reproman.utils) log() (reproman.cmd.Runner method) LogLevelAction (class in reproman.cmdline.helpers)

M

MAGENTA (reproman.log.ColorFormatter attribute) main() (in module reproman.cmdline.main) major (reproman.utils.SemanticVersion attribute) make_tempfile() (in module reproman.utils) md5sum() (in module reproman.utils) merge_dicts() (in module reproman.utils) minor (reproman.utils.SemanticVersion attribute) module reproman.api reproman.cmd reproman.cmdline.common_args reproman.cmdline.helpers reproman.cmdline.main reproman.config reproman.consts reproman.log reproman.support.configparserinc reproman.utils reproman.version

N

not_supported_on_windows() (in module reproman.utils)

O

only_with_values() (in module reproman.utils)

optional_args() (in module reproman.utils) orchestrator

P

package parse_kv_list() (in module reproman.utils) parse_semantic_version() (in module reproman.utils) parser_add_common_args() (in module reproman.cmdline.helpers) parser_add_common_opt() (in module reproman.cmdline.helpers) partition() (in module reproman.utils)

patch (reproman.utils.SemanticVersion attribute) PathRoot (class in reproman.utils) PBSAction (class in reproman.cmdline.helpers) protocol (reproman.cmd.GitRunner attribute) (reproman.cmd.Runner attribute) pycache_source() (in module reproman.utils)

R

read() (reproman.support.configparserinc.SafeConfigParserWithIncludes method) RED (reproman.log.ColorFormatter attribute) RegexpType (class in reproman.cmdline.helpers) reload() (reproman.config.ConfigManager method) reproman.api module reproman.cmd module reproman.cmdline.common_args module reproman.cmdline.helpers module reproman.cmdline.main module reproman.config module reproman.consts module

reproman.log module reproman.support.configparserinc module reproman.utils module reproman.version module RESET_SEQ (reproman.log.ColorFormatter attribute) resource rmtemp() (in module reproman.utils) rmtree() (in module reproman.utils) rotree() (in module reproman.utils) run() (reproman.cmd.GitRunner method) (reproman.cmd.Runner method) run_via_pbs() (in module reproman.cmdline.helpers) Runner (class in reproman.cmd)

S

safe_write() (in module reproman.utils) SafeConfigParserWithIncludes (class in reproman.support.configparserinc) SECTION_NAME (reproman.support.configparserinc.SafeConfigParserWithIncludes attribute) SemanticVersion (class in reproman.utils) setup_exceptionhook() (in module reproman.utils) setup_parser() (in module reproman.cmdline.main)

shortened_repr() (in module reproman.utils) sorted_files() (in module reproman.utils) strip_arg_from_argv() (in module reproman.cmdline.helpers) submitter swallow_logs() (in module reproman.utils) swallow_outputs() (in module reproman.utils)

T

tag (reproman.utils.SemanticVersion attribute)

to_binarystring() (in module reproman.utils) to_unicode() (in module reproman.utils)

U

unique() (in module reproman.utils)

updated() (in module reproman.utils)

V

virtual machine

W

WHITE (reproman.log.ColorFormatter attribute)

write_update() (in module reproman.utils)

Y

YELLOW (reproman.log.ColorFormatter attribute)